rs249262749 SNP Detail

Summary

• ID
  rs249262749
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143580352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAATTGTCC CTCTCATGTT AAGTCAAGAA
  GGTCAAAATC TAATAAAAGA TAATAGTAGT TGTAGAACTA AAGATTCGGG AAAGTAACTA
  AAAATTATAT TCAAAATAGT TTTATTgctg ggcagtggtg gcgcatgcct ttaatcccag
  M
  acttgggagg cagaggcagg cggatttctg agttcaagac cagcctggtc tacacagtga
  gttccaggac acccagggct acacagagaa acccctgtct tgaaaaaaac aaaCAAACAA
  AAAAAAATTT TTGTTTTATC ACGGGCAAAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320010267	CHEV_1_145551744	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249262749					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143580352 () rs orientation: forward

Symbol	Name	Function Class
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component	1721 bp upstream
Cpgi835	CpG island 835	1126 bp distal
Gm69373	predicted gene, 69373	571 bp upstream
Rr419928	regulatory region 419928	1231 bp distal
Rr419929	regulatory region 419929	1681 bp distal
Tssr14091	transcription start site region 14091	1817 bp upstream
Tssr14092	transcription start site region 14092	1785 bp upstream
Tssr14093	transcription start site region 14093	1767 bp upstream