rs249275270 SNP Detail

Summary

• ID
  rs249275270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13251101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGGACTT CCAGCTCCGA
  TGCTGAAAAA GGAGGGTTTT TTTGTTTGTT TGTTTTTCCA CTTTGCTTCC TTGCTTGTCG
  AGGCTGAGAA CATACGGTGT TTTTGAGGGC CACCATCAAA GGGTACTCGC TTCTCCAAAC
  CTTGGAACCC GAGGTCTAGC CTTGGAAAGA GTTGCCGCCT TACCATCTCT CCTCGCCTAG
  R
  GAAGCCCCAG CTGTGTGCGC TACTGCAGGG TCACAGTGCC GCGGTGCCGA GCTTCTTTCG
  TGGTCCCTGT CGCCGTCCGT TTCTTGAGAT TTCAGACTCT GGGCTTGGAA ACCAGTTGAC
  TGCCTTTCTT AGCGAGGTGC CCTCGGAAAC CTGTGGAGGA ATGTTTGGAT TATGAATGCT
  CACCGTGCCG AGGTAAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505058	CHEV_8_13201101	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249275270					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13251101 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	within coordinates
Cpgi20110	CpG island 20110	within coordinates
Gm56825	predicted gene, 56825	within coordinates
Grtp1	GH regulated TBC protein 1	406 bp upstream
Rr659872	regulatory region 659872	1533 bp distal
Rr659873	regulatory region 659873	137 bp distal
Rr659874	regulatory region 659874	within coordinates
Rr659875	regulatory region 659875	383 bp proximal
Rr659876	regulatory region 659876	771 bp proximal
Rr659877	regulatory region 659877	1122 bp proximal
Tssr76386	transcription start site region 76386	314 bp downstream
Tssr76387	transcription start site region 76387	130 bp downstream
Tssr80428	transcription start site region 80428	465 bp upstream
Tssr80429	transcription start site region 80429	312 bp downstream