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rs249284037 SNP Detail
Summary
  • ID
    rs249284037
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    ChrX:9304836 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTAGTAAATT TCCTGTTCAG
TTGAGGCCAC TCTATTCCTA CTTTTTTCCA CAAGGGACAA AAATGTTCAA TTTACTCACA
AGGAGCAGGC TCGACTGAGT ATAGAGACGG CTGGCAAACT CAAATGGAGT TAACATCCCC
AGAAAATGAA ACCCAAGCAG GGGTTTGGAA ATTTCTTCCA CAGAGGTATC ATGGTAGTGG
S
TGATTTTGTG TGTCAACTTG ATACAAGCTG GAGTTATCAC AGAGAAAGGA GCCTCCCTTG
AGGAAATGCT TTCATGAGAT CCAGCTGTAA GGCATTTTCT CAACTAGTGA TCAAGGGGGA
AGGGCACAGC CCATTGTGGG TGGTGCCATC CCTGAGCTGG TAGTCCTGGG TTCCATAAGA
AAGCAAGCTG AACCTAGTAA                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403025302 MGP_WTSI_X_9015723 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249284037 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss403025302 MGP_WTSI_X_9015723 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:9304836 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cybb cytochrome b-245, beta polypeptide within coordinates
Rr406085 regulatory region 406085 1950 bp upstream
Tssr160519 transcription start site region 160519 1952 bp downstream
Tssr160520 transcription start site region 160520 1888 bp downstream
Tssr160521 transcription start site region 160521 1834 bp downstream
Tssr160522 transcription start site region 160522 1717 bp downstream
Tssr162882 transcription start site region 162882 1933 bp upstream
Tssr162883 transcription start site region 162883 1543 bp upstream
Tssr162884 transcription start site region 162884 1478 bp upstream
Tssr162885 transcription start site region 162885 1442 bp upstream
Tssr162886 transcription start site region 162886 1422 bp upstream
Tssr162887 transcription start site region 162887 1384 bp upstream
Tssr162888 transcription start site region 162888 1330 bp upstream
Tssr162889 transcription start site region 162889 1312 bp upstream
Tssr162890 transcription start site region 162890 1242 bp upstream
Tssr162891 transcription start site region 162891 1214 bp upstream
Tssr162892 transcription start site region 162892 1159 bp upstream
Tssr162893 transcription start site region 162893 1054 bp upstream
Tssr162894 transcription start site region 162894 1018 bp upstream
Tssr162895 transcription start site region 162895 962 bp upstream
Tssr162896 transcription start site region 162896 935 bp upstream
Tssr162897 transcription start site region 162897 904 bp upstream
Tssr162898 transcription start site region 162898 884 bp upstream
Tssr162899 transcription start site region 162899 744 bp upstream
Tssr162900 transcription start site region 162900 726 bp upstream
Tssr162901 transcription start site region 162901 697 bp upstream
Tssr162902 transcription start site region 162902 614 bp upstream
Tssr162903 transcription start site region 162903 560 bp upstream
Tssr162904 transcription start site region 162904 453 bp upstream
Tssr162905 transcription start site region 162905 379 bp upstream
Tssr162906 transcription start site region 162906 364 bp upstream
Tssr162907 transcription start site region 162907 292 bp upstream
Tssr162908 transcription start site region 162908 261 bp upstream
Tssr162909 transcription start site region 162909 1326 bp downstream
Tssr162910 transcription start site region 162910 1351 bp downstream
Tssr162911 transcription start site region 162911 1405 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory