rs249287938 SNP Detail

Summary

• ID
  rs249287938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134975727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAGGAT GATCCCCAGC
  CAGCCCAGGA CTGCCAAGGA GATTCCCAGG ACCTGTAGTC CCATAGACGC CATCGCTCAG
  CCTCTGCAGG GGTCAAAGTC GGTGACCACA AAAAGTACCT CTCTCTCTCT CTCTCTGGAG
  TCAGAGGGCT GAGAAAGTTT TTTTCGGTGA GCCTCAGGGA CACAAAGCCA GCTGAGTCCG
  R
  TGCACCAGCT ACCAAGCGCG AACACTGCAG CTCTTTCCTG CCTGCACCTG CAACAAGAAA
  GGGCGGCCAC AGGTGCTGCA GTTAAAGCTC CTAGAGGAGG GGCGGAGGCA GAGGGAGGGG
  TTTCAGTCCC GGAGGCCTCC CTCGGGACCA GTTTCTCTGG ATTCCTGAGC TTGGGCCAAC
  AAAGGCGTTC AGAGGCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366823241	MGP_WTSI_5_135422743	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249287938					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366823241	MGP_WTSI_5_135422743	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134975727 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	within coordinates
Cpgi16731	CpG island 16731	101 bp distal
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	1743 bp downstream
Tssr49108	transcription start site region 49108	1566 bp downstream
Tssr49109	transcription start site region 49109	692 bp downstream
Tssr53699	transcription start site region 53699	1615 bp upstream
Tssr53700	transcription start site region 53700	1037 bp upstream
Tssr53701	transcription start site region 53701	842 bp upstream
Tssr53702	transcription start site region 53702	602 bp upstream
Tssr53703	transcription start site region 53703	430 bp upstream
Tssr53704	transcription start site region 53704	23 bp downstream
Tssr53705	transcription start site region 53705	44 bp downstream