rs249304840 SNP Detail

Summary

• ID
  rs249304840
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTTGTA CTCATGCCTT
  TCTTTTACGG AGAGGAGAGA GGAATCTGTT TCCTGCATGT GTGAGGTCAT TTAAAGAAGA
  TCTTAACTAT AAAACTTCCA CCATGATTAG AAATTAGCCT TTGATAGCAC TGGAAATGTA
  ATTGAGGAAA ATATGTAATA AAAAATATTA AAAAAAAAAG AAATTAGCCT TTGACAGATA
  W
  GTCTATAAGA ATGAATAAGG TTATAGGCTT ATAACTGTAG TGAGCATTCA AGCTTTTTTT
  TTCTTCACCT TGTTGGATTA TGCAAGAGAA AATCATCAAC CATACACACT AAGGGTAGGA
  ACTGAGGACA CAGTCACAGC CTAGGTATCT TTCTTTGCTC TGCTAGGTAC TTTTCTCACC
  TCCTCAGACG TCAACACTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356428097	MGP_WTSI_2_164102260	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249304840					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356428097	MGP_WTSI_2_164102260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118444 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	588 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	566 bp downstream
Tssr21550	transcription start site region 21550	454 bp downstream
Tssr21551	transcription start site region 21551	578 bp upstream
Tssr21552	transcription start site region 21552	622 bp upstream
Tssr27409	transcription start site region 27409	528 bp upstream
Tssr27410	transcription start site region 27410	498 bp upstream
Tssr27411	transcription start site region 27411	473 bp upstream
Tssr27412	transcription start site region 27412	446 bp upstream
Tssr27413	transcription start site region 27413	431 bp upstream
Tssr27414	transcription start site region 27414	419 bp upstream
Tssr27415	transcription start site region 27415	400 bp upstream
Tssr27416	transcription start site region 27416	553 bp downstream
Tssr27417	transcription start site region 27417	562 bp downstream
Tssr27418	transcription start site region 27418	633 bp downstream
Tssr27419	transcription start site region 27419	643 bp downstream
Tssr27420	transcription start site region 27420	663 bp downstream
Tssr27421	transcription start site region 27421	687 bp downstream
Tssr27422	transcription start site region 27422	705 bp downstream
Tssr27423	transcription start site region 27423	743 bp downstream
Tssr27424	transcription start site region 27424	773 bp downstream
Tssr27425	transcription start site region 27425	794 bp downstream
Tssr27426	transcription start site region 27426	1052 bp downstream
Tssr27427	transcription start site region 27427	1730 bp downstream
Tssr27428	transcription start site region 27428	1776 bp downstream
Tssr27429	transcription start site region 27429	1802 bp downstream
Tssr27430	transcription start site region 27430	1898 bp downstream