rs249307225 SNP Detail

Summary

• ID
  rs249307225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35252076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGTGC CGGGAAGGGC
  GGGCGCGGCG CGGGGCGGGC CGGGGGCGGG GGCGCAGGGC GGCCCATTTC CTCCTGGGAG
  CCGGACGGGC GGGAGACAAA GCGGCGGCCG TCGGCTTGGC GCCTCAGGAG TCGTCCCGTG
  CTCGCCCAGT TCGCTGCAGG TAACTCTTCG TACCTCCCCT CGGGGCGCGC GGGGCCCCCT
  R
  GTGGGGCGCG GGGCTCCTCA GGCTGGGGTC CCGGGTGTCC GGCTCGGGCT CTCGGCTGCC
  GCCGCCCTAG AGCGTCGGGC TAGGGCGGCA TCCCCGAGCA GCCTGGGCCT GGGCGGGCGG
  AGCCCGACGC TCGGGAAGCG GGTCGACCGC CGGGGCGCCT TCTTGGAAAA CTTTCTCCCT
  CTTTCTAAAC TTTGTTCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400253736	MGP_WTSI_18_35278677	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249307225					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400253736	MGP_WTSI_18_35278677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35252076 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	within coordinates
Ctnna1	catenin alpha 1	within coordinates
Gm46617	predicted gene, 46617	184 bp upstream
Tssr150509	transcription start site region 150509	120 bp downstream
Tssr150510	transcription start site region 150510	97 bp downstream
Tssr150511	transcription start site region 150511	70 bp downstream
Tssr150512	transcription start site region 150512	398 bp upstream
Tssr150513	transcription start site region 150513	783 bp upstream
Tssr150514	transcription start site region 150514	806 bp upstream
Tssr150515	transcription start site region 150515	1209 bp upstream
Tssr152859	transcription start site region 152859	205 bp upstream