rs249311719 SNP Detail

Summary

• ID
  rs249311719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43113741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTCATC AGGGGAGGAG
  TCTCCCAGCA GATTCGAGAG TTTGTGGTGG GTGTATTTGG TAAGTGGGGT CCGAGGTCCA
  GAGTGCAGGC TGCCGAGTGC CTGCTCTCCT CGCAGACCTC TGGACAAGTC TGTGCTGTGT
  GAATATGCTT CCTTCCTAGA AGAAAGAGCC TGTGGGTGGG GATAAGAGCA AAGGCAGGGA
  Y
  CAGAGCTCAC CTTGTCTGAA GGAGGAGGTC TAAGCTGGAC TCTTAGGTCT GAGAGAGGCC
  TGGACCTCAC TTAGGTGTGA CGGGGGAGGG CTAGGGCCTG AATCCGTGGG ACCGAGGGAA
  TTAAGACTGG GGTTTGGACT CAGGTCTGAA GGAGGAGGAT TGAAGTCTGA ACCCCTGGGT
  TTGAGGGAAG AGGGGGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371132446	MGP_WTSI_7_50719687	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249311719					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371132446	MGP_WTSI_7_50719687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43113741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	514 bp proximal
Cpgi18933	CpG island 18933	1845 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like	730 bp downstream
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	1413 bp upstream
Rr645966	regulatory region 645966	526 bp proximal
Rr645967	regulatory region 645967	1191 bp proximal
Rr645968	regulatory region 645968	1253 bp proximal
Rr645969	regulatory region 645969	1261 bp proximal
Rr645970	regulatory region 645970	1953 bp proximal
Tssr2211	transcription start site region 2211	1989 bp downstream
Tssr66006	transcription start site region 66006	1204 bp downstream
Tssr66007	transcription start site region 66007	1132 bp downstream
Tssr66008	transcription start site region 66008	1102 bp downstream
Tssr66009	transcription start site region 66009	1091 bp downstream
Tssr66010	transcription start site region 66010	1691 bp upstream
Tssr72134	transcription start site region 72134	65 bp upstream
Tssr72135	transcription start site region 72135	1246 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates