rs249318175 SNP Detail

Summary

• ID
  rs249318175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:123827034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAGAGC AGTCAGTGCT
  TTTAACCACT GAGCCATTTC TCCAGCCCTA AGTTAATAAT CTTTAAAAAT CAAAAAATCA
  AGGTTATGTG ACTAAAAGAG TTCCAGATTA TGAATGGAAG AAAGTTTATT ACTGGCAGAG
  GCAGGTGGAT CTCTGAGTTC CAGGCCAGTC TGGTCTACAG AGTGAGCCAG GACCGCCAGG
  R
  CTACACAGAG AAACCTTGTC TCGAAAAACC AAAAAAAAAA AAAAAAAAAA AAGAAAAGAT
  GTGGTGAGGG ATTAGGCAAG AGTTTTCTGA CACTCCCAAA CACCCAGAAT TCAGTAAGTA
  CCCACAGGGA AGGGAGGGGT TCCTGGAGCA GCTTGCCGGA AAATGAAGAG CAGGCCACAG
  CCATAAGCTG CTAAGTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376335248	MGP_WTSI_8_125624195	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249318175					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376335248	MGP_WTSI_8_125624195	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123827034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21239	CpG island 21239	1839 bp proximal
Rr382749	regulatory region 382749	within coordinates
Rr672351	regulatory region 672351	1808 bp distal
Rr672353	regulatory region 672353	24 bp proximal
Rr672354	regulatory region 672354	1146 bp proximal
Rr672355	regulatory region 672355	1565 bp proximal
Tssr83335	transcription start site region 83335	1965 bp downstream