rs249322480 SNP Detail

Summary

• ID
  rs249322480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126813701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCTGAA ACAACGGCCC
  AGACAGACAG GAGTGGCTAA CAGTGGAATG ACTAGTGGCC AGGAGGCCCC CAGCGGGCAG
  CTCCATTCCT GCTGGGAAGA AGACTCCGGC AGCTGGGGGA AGGCGGGAAG CAGTTTTTAT
  TAGATGGAGA ACTTGGAGGA ATAGGAAAAC CCAATTGGAA CGCGGGAAGA GCGGTGGGGG
  K
  GGGGGGGGAG GAGTGGTGGG GAGGCTTTTC TTGGAGTGCG GTCCTCTTAG AGCCGCGCGG
  AAGACGAAGT CGGATGGGCC TTAAACTTCC GGATTGGAGG GATCTGGTTT AAGTGCAAGG
  GCAGGCCTAC CCTCTGGATC CCCGGATTGG GCGCTGGGCT GTCCAGCGCG GGGATGGGAT
  AGCCGATTAG CGGTGAGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083293	MGP_WTSI_7_134358043	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249322480					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083293	MGP_WTSI_7_134358043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126813701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	67 bp proximal
Cpgi19732	CpG island 19732	682 bp proximal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	242 bp downstream
Rr655746	regulatory region 655746	815 bp distal
Rr655747	regulatory region 655747	911 bp proximal
Septin1	septin 1	within coordinates
Tssr69170	transcription start site region 69170	1899 bp downstream
Tssr69171	transcription start site region 69171	1892 bp downstream
Tssr69172	transcription start site region 69172	1857 bp downstream
Tssr69173	transcription start site region 69173	1666 bp downstream
Tssr69174	transcription start site region 69174	1400 bp downstream
Tssr69175	transcription start site region 69175	1381 bp downstream
Tssr69176	transcription start site region 69176	1340 bp downstream
Tssr69177	transcription start site region 69177	1326 bp downstream
Tssr69178	transcription start site region 69178	285 bp downstream
Tssr69179	transcription start site region 69179	268 bp downstream
Tssr69180	transcription start site region 69180	3 bp upstream
Tssr74959	transcription start site region 74959	1051 bp upstream
Tssr74960	transcription start site region 74960	312 bp upstream
Tssr74961	transcription start site region 74961	217 bp downstream
Tssr74962	transcription start site region 74962	485 bp downstream
Tssr74963	transcription start site region 74963	514 bp downstream
Tssr74964	transcription start site region 74964	556 bp downstream
Tssr74965	transcription start site region 74965	800 bp downstream
Tssr74966	transcription start site region 74966	850 bp downstream
Tssr74967	transcription start site region 74967	1154 bp downstream