rs249329879 SNP Detail

Summary

• ID
  rs249329879
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74860464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCTCGGC GTCTCGGCGG
  CCGCGGGGTA GATGCGCGCT GCGCTCGGGG AGGCGTGGCT CGGAGCACGG AGTGTGATGT
  GAGCGGCCGG GCGGCCGCAG AGAGCAGTGC CGGGAGGAGG AGCGAGGGGT CCCGGAGGGC
  GGCGAGCGGG CGGGCCATGG GAGCCGTTCC CGGGTGGGTT GAGCCACGCG TGGGTCGGCG
  S
  GGCTGAGGAC ATGCCCAGAC TCTGCTGCTG ACCGGCTCCG GCTGGAACCC GGCTACTGAA
  GCCTCGGAGG GGCTAGCCAG AGGGGATCCC CCGCAGGTGA GGCCCGGGGG GCTGCGGGGG
  CTGCTGCGCC CGAGCCCCTG CGGGGGTGCC TCGGTGCCCA GAGGCTACTG GACCGAGGGC
  TGCCTTAGCT CCTGTGGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378076165	MGP_WTSI_9_74800989	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249329879					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378076165	MGP_WTSI_9_74800989	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74860464 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	within coordinates
Cpgi22037	CpG island 22037	within coordinates
Gm68252	predicted gene, 68252	365 bp upstream
Rr401515	regulatory region 401515	1045 bp downstream
Rr401516	regulatory region 401516	152 bp downstream
Rr683033	regulatory region 683033	1360 bp distal
Rr683034	regulatory region 683034	1446 bp distal
Rr683035	regulatory region 683035	376 bp distal
Rr683036	regulatory region 683036	85 bp distal
Rr683037	regulatory region 683037	within coordinates
Tssr86114	transcription start site region 86114	247 bp downstream
Tssr86115	transcription start site region 86115	91 bp downstream
Tssr86116	transcription start site region 86116	within coordinates
Tssr86117	transcription start site region 86117	379 bp upstream