rs249330062 SNP Detail

Summary

• ID
  rs249330062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7553707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATGAAATT TTCAAATTGT TTAGGCAAAT
  GACTGTACAT TTGTGTTCAC CATTTCTCCT TTTAAAAGTT TTGAAAATAA AAATAGAATG
  TTCACATTAT GAAATCCCTC TGAATGTCTA CATTTAGGTT TTAAAACAAT ATAAACACTG
  R
  AGGCAAACAT TAGTTTGGCT TGCAAACACT TCTTTCCTCT TCATATTATA CTAAAAACAT
  ATTAGGGAAC GATGATTCCC AAAAGAAAAC AACTCTATCC AAAAGACCCC ATCGCTctgg
  gtgtggtggt acacacctgt agttccagta                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321734088	CHEV_6_7503707	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249330062					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7553707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	1088 bp proximal
Rr146475	regulatory region 146475	1093 bp proximal
Tac1	tachykinin 1	1354 bp upstream
Tssr54885	transcription start site region 54885	1346 bp upstream