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rs249330304 SNP Detail
Summary
  • ID
    rs249330304
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94843599 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAATGTTTC TTTTGTTCAA
AGTATTTTTT ATTCTTTTTT TTTTTTTTTT TAATGGATAG GGACTTGTGT GAATTGTTGG
GGTTTTTTTT TTTTTTTTTT TTGGTTTTGT TTTTTTTTGT TTTGTTTTGT TTTTTTTCCT
GAAGGTGCTA TTTAACAAGG GAGAAGAGAG TGCGGGGACT TCACCCTGCC CACTCTCTAC
Y
CTCTCTCCAC TCTTCTAGTT CCTGGGCCTA TCTGATCTCT CTCTTTCTTC TGAAACCCTC
CCCTCTTGCT GCTGCTCCCT CCCCTCTGCC TCTCTCTTGG TCTGTCCTGC ATCAGGGTTT
CAGAGCACCA CTTTCCAAAG CACAAAACAG TTTTTACCCC TGGGCTGGGA GGAAACAAGA
GACTCTGTAC CTATTTTGTA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336283 MGP_WTSI_11_94814087 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249330304 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336283 MGP_WTSI_11_94814087 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94843599 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 545 bp proximal
Gm74287 predicted gene, 74287 1478 bp downstream
Rr454892 regulatory region 454892 207 bp distal
Tssr3647 transcription start site region 3647 789 bp downstream
Tssr104273 transcription start site region 104273 1935 bp downstream
Tssr104274 transcription start site region 104274 1917 bp downstream
Tssr104275 transcription start site region 104275 1908 bp downstream
Tssr104276 transcription start site region 104276 1897 bp downstream
Tssr104277 transcription start site region 104277 1623 bp downstream
Tssr104278 transcription start site region 104278 1602 bp downstream
Tssr104279 transcription start site region 104279 1545 bp downstream
Tssr104280 transcription start site region 104280 1533 bp downstream
Tssr104281 transcription start site region 104281 1519 bp downstream
Tssr104282 transcription start site region 104282 1449 bp downstream
Tssr104283 transcription start site region 104283 1296 bp downstream
Tssr104284 transcription start site region 104284 1236 bp downstream
Tssr104285 transcription start site region 104285 1206 bp downstream
Tssr104286 transcription start site region 104286 1173 bp downstream
Tssr104287 transcription start site region 104287 1149 bp downstream
Tssr104288 transcription start site region 104288 1109 bp downstream
Tssr104289 transcription start site region 104289 1101 bp downstream
Tssr104290 transcription start site region 104290 1053 bp downstream
Tssr104291 transcription start site region 104291 1038 bp downstream
Tssr104292 transcription start site region 104292 941 bp downstream
Tssr104293 transcription start site region 104293 834 bp downstream
Tssr104294 transcription start site region 104294 800 bp downstream
Tssr104295 transcription start site region 104295 756 bp downstream
Tssr104296 transcription start site region 104296 732 bp downstream
Tssr104297 transcription start site region 104297 709 bp downstream
Tssr104298 transcription start site region 104298 675 bp downstream
Tssr104299 transcription start site region 104299 641 bp downstream
Tssr104300 transcription start site region 104300 621 bp downstream
Tssr104301 transcription start site region 104301 501 bp downstream
Tssr104302 transcription start site region 104302 487 bp downstream
Tssr104303 transcription start site region 104303 468 bp downstream
Tssr104304 transcription start site region 104304 426 bp downstream
Tssr104305 transcription start site region 104305 404 bp downstream
Tssr104306 transcription start site region 104306 389 bp downstream
Tssr104307 transcription start site region 104307 372 bp downstream
Tssr104308 transcription start site region 104308 299 bp downstream
Tssr104309 transcription start site region 104309 275 bp downstream
Tssr104310 transcription start site region 104310 189 bp downstream
Tssr104311 transcription start site region 104311 140 bp downstream
Tssr104312 transcription start site region 104312 71 bp downstream
Tssr104313 transcription start site region 104313 55 bp downstream
Tssr104314 transcription start site region 104314 346 bp upstream
Tssr110222 transcription start site region 110222 1875 bp upstream
Tssr110223 transcription start site region 110223 1516 bp upstream
Tssr110224 transcription start site region 110224 1452 bp upstream
Tssr110225 transcription start site region 110225 1236 bp upstream
Tssr110226 transcription start site region 110226 1196 bp upstream
Tssr110227 transcription start site region 110227 1183 bp upstream
Tssr110228 transcription start site region 110228 1123 bp upstream
Tssr110229 transcription start site region 110229 1103 bp upstream
Tssr110230 transcription start site region 110230 1066 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory