rs249338676 SNP Detail

Summary

• ID
  rs249338676
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25402299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAAATCCT GCAGTTGCAA CAGGTGTAAA
  TTTCCCCCCC AAGCTTCTGG ATCCAATTGA TATCAGACCC CTATTTCCCT GCATGGGGAG
  AAGTTCAAGT CCAGTCCCCC AGCAGAGGAG TTTCAAGTGA AGACAGGACA GTTGGGCTGG
  R
  TTTTTGTAGC TGAACTTCAT GTCTTCAGGA GCCAGGTTGC TGCACTGTGA GTTGTGTGTC
  TCCCCTCTAT GCTGCCTAGT GAGGGCACCC TCTACCTTCT TGGAGTGCTG TGTAAGACTG
  GCCCTCACTC TAGCAGGAAT ATCTACATCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325336538	CHEV_17_25320270	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249338676					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25402299 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	288 bp downstream
Cpgi8755	CpG island 8755	678 bp proximal
Rr370183	regulatory region 370183	1015 bp upstream
Rr523507	regulatory region 523507	within coordinates
Rr523508	regulatory region 523508	82 bp proximal
Rr523509	regulatory region 523509	739 bp proximal
Tssr5037	transcription start site region 5037	1233 bp upstream
Tssr143142	transcription start site region 143142	1239 bp upstream
Tssr143143	transcription start site region 143143	1285 bp upstream
Tssr146818	transcription start site region 146818	1057 bp downstream
Tssr146819	transcription start site region 146819	1079 bp downstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	1236 bp upstream