rs249343192 SNP Detail

Summary

• ID
  rs249343192
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:69997531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTTAGA GAGAGGCATG
  GGGCGCGTGA TTACATCCTA GTTATAGACA GAACATAAAG ACCCACGTTA ACACCCATTT
  GCAGGAAGGA AGGAAGAGGT GGGGAGGGGG GTGGTAAGGC AGAGGGATGA AGCGTGGAGA
  GATGGGGAGG GCGGGGGCCA TCGAGCCTGG GCGTTATTAA CAAGGCTTGC CTGACGAAGC
  K
  AGGCGCAAGG CGAGAGCCAC GGGAAGTCTC AGGCTGTAGA GGGAAGCATC CGCCCCACTA
  GCAGGTCGGG GTTTCCCTTT CCTTGTCCCC ATCAATTCCC GCATGGGGGT CTCCTATTCT
  CTCTGCCAGA GCACAAGGGA TGCCCACGCT GCCTCCGACC CTCTCTTCAC TTTCTATCAG
  ATCTCTCCAG CTAAACTAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322251015	CHEV_7_77492669	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249343192					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:69997531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19247	CpG island 19247	1294 bp distal
Cpgi19248	CpG island 19248	within coordinates
Cpgi19249	CpG island 19249	675 bp proximal
Gm44948	predicted gene 44948	87 bp upstream
Rr648636	regulatory region 648636	98 bp distal
Rr648637	regulatory region 648637	within coordinates
Rr648638	regulatory region 648638	1019 bp proximal