rs249343496 SNP Detail

Summary

• ID
  rs249343496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88871928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aagaaacaa aaTTTAATCT GGCAAttttt
  taaaaaagat ctatttatga gtatgccgta gctatcttct gacacaccag aagagggcac
  cagatctcat tacagatggt tatgagccac catgtagttg gtgggaattg aactcaggac
  Y
  tctggaagaa tagtcagtgc tcttaaccac tgagctattt tgccagcccT AATCTGGCAA
  TTTTTTTTTG ATAGTTTATT ATGCAGAGGA AGCAGAGAAA GAGAAAAATT TAAAGAGTTA
  AGTATAGAGA TCCACTGGTC CTTGGAACCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321602378	CHEV_5_89153094	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249343496					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88871928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16032	CpG island 16032	2000 bp distal
Mob1b	MOB kinase activator 1B	Intron
Rr614171	regulatory region 614171	1409 bp distal
Rr614172	regulatory region 614172	within coordinates
Rr614173	regulatory region 614173	57 bp distal
Rr614174	regulatory region 614174	1885 bp proximal