rs249346041 SNP Detail

Summary

• ID
  rs249346041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23118592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGCGGCG GCGGAACGGA
  ACGGTCGGAT TGGCCGCGCG CCGTAGTTCT AGACGCACCT CTCCACCGAA GGGCCCTTCT
  GACTGGCAGG GGGAGAAAGT AAACAGAGTT GAATCACCCT CCCCACTGGC CAATTGGAGG
  GGGCCTGGAT TGTGACGTGA TGGGATTCTG CGAAATTGTT ACTGAGCTGG AGAATGCCGG
  R
  GAGGCGCGGC GCGGCAGGAC CAGGGGCTCA GCGGCCGTCG GCGGACGCGG GAAGAAGTGT
  CTCGTAGGCG CGGAGCCCCA CTCAGCCCCG GCCCCCCTCG TCCGCGTACT CGGCTGATGC
  CCCGGGGCGT CAGCTCGGCG GAGAGGCGGT CGAGGACGTG CGCCTGGCTC GCAGTTGGCT
  TTCTCTGGGA CTCCGACACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402048966	MGP_WTSI_19_23215718	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249346041					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402048966	MGP_WTSI_19_23215718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23118592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	within coordinates
Gm56648	predicted gene, 56648	73 bp upstream
Gm59174	predicted gene, 59174	601 bp downstream
Klf9	Kruppel-like transcription factor 9	mRNA-UTR
Rr405898	regulatory region 405898	327 bp downstream
Rr545290	regulatory region 545290	1075 bp distal
Rr545291	regulatory region 545291	125 bp distal
Rr545292	regulatory region 545292	within coordinates
Tssr155578	transcription start site region 155578	1117 bp downstream
Tssr155579	transcription start site region 155579	387 bp downstream
Tssr155580	transcription start site region 155580	277 bp downstream
Tssr155581	transcription start site region 155581	261 bp downstream
Tssr155582	transcription start site region 155582	224 bp downstream
Tssr155583	transcription start site region 155583	195 bp downstream
Tssr155584	transcription start site region 155584	151 bp downstream
Tssr155585	transcription start site region 155585	91 bp downstream
Tssr155586	transcription start site region 155586	within coordinates
Tssr155587	transcription start site region 155587	414 bp upstream
Tssr155588	transcription start site region 155588	448 bp upstream
Tssr158621	transcription start site region 158621	575 bp upstream
Tssr158622	transcription start site region 158622	255 bp upstream
Tssr158623	transcription start site region 158623	828 bp downstream
Tssr158624	transcription start site region 158624	1142 bp downstream