rs249350143 SNP Detail

Summary

• ID
  rs249350143
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5913685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAAGCTA GTGAAAAATC
  AGGGCCTACA TAATTGAATC CTAAAATCTT TCCTACCGTT TTTCTTTTCC AGTGGCTAGA
  AAGTTTGAGA TGGTGGGGAG AGGGGATTGC TGATCTCTGC AGTGTGTAGC TCCTTGAAAG
  GTTGGTGGCA GGGCTGGGAA GGGGCACCCT GTTATGGCAC ACTGCATGTA TATTTGAGCC
  S
  GGTCCTTATT TGGCTGCAGG TCAGAATTTC AAAAGGAAGT CTCCTTTGGC ATTGCGTGAA
  AGAAAAAGGA GTGATGACTC ATACTGTTGT ACCCTTGGCC AGGAGATAAA GTCCTTGTTC
  ATTGTGGGAC TCCCAGAAGG GCCAGGGAGT AATTTCCCCT TTCCATCCTT TACAATAGCA
  GATAGCTACT CTGGAAGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387606002	MGP_WTSI_13_5862932	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249350143					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387606002	MGP_WTSI_13_5862932	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5913685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5253	CpG island 5253	1750 bp distal
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	1115 bp downstream
Rr403559	regulatory region 403559	854 bp upstream
Tssr118243	transcription start site region 118243	1811 bp downstream
Tssr118244	transcription start site region 118244	1065 bp downstream
Tssr118245	transcription start site region 118245	814 bp downstream
Tssr118246	transcription start site region 118246	129 bp upstream
Tssr118247	transcription start site region 118247	195 bp upstream
Tssr118248	transcription start site region 118248	800 bp upstream
Tssr118249	transcription start site region 118249	1005 bp upstream
Tssr118250	transcription start site region 118250	1064 bp upstream
Tssr118251	transcription start site region 118251	1084 bp upstream
Tssr118252	transcription start site region 118252	1164 bp upstream
Tssr121319	transcription start site region 121319	619 bp downstream
Tssr121320	transcription start site region 121320	643 bp downstream
Tssr121321	transcription start site region 121321	666 bp downstream
Tssr121322	transcription start site region 121322	687 bp downstream