rs249353649 SNP Detail

Summary

• ID
  rs249353649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190955284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTAGAAG TTTAGGTTAT
  ATGTGTCTAT GTCCGTATAG GTAGGTATGT GCAGGAGTGC AGTGTCTCCA GAGGCCAGAG
  GGTGTTGGAT CCCTAGTATC TGTAAGGAGC TAATGTGCTG GAAATTGACT CTAGTCCTCT
  GCAGGAGCAG GTCTTTCTTG TAACTGCGGA GCCATGTCTC CAGCCTCCAT AGTGTCCTCT
  Y
  TGCTTTCATG TCACACATAT ACATGCATAT ACAGATTTAA ATCTAGATTC TGCATATGAC
  AGAAAGCATG CTATACTTTC CCCAAGTGTG GCTTAGGTCA CTTAACACAA TGATTTCCAG
  TTCCATCCAT TTTTCCTACA GCAATTTTCA TTCTTTGCTA GCAAAATTCA ATTGCTGGGG
  CCAGAAGATG GCTCAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352828678	MGP_WTSI_1_193046966	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249353649					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352828678	MGP_WTSI_1_193046966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190955284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	756 bp proximal
D730003I15Rik	RIKEN cDNA D730003I15 gene	1367 bp upstream
Rr26272	regulatory region 26272	608 bp distal
Rr29193	regulatory region 29193	716 bp proximal
Rr396715	regulatory region 396715	1065 bp upstream
Tssr372	transcription start site region 372	1760 bp downstream
Tssr10744	transcription start site region 10744	1356 bp upstream
Tssr10745	transcription start site region 10745	1375 bp upstream
Tssr10746	transcription start site region 10746	1959 bp upstream
Tssr15770	transcription start site region 15770	1824 bp downstream
Tssr15771	transcription start site region 15771	1889 bp downstream