rs249357428 SNP Detail

Summary

• ID
  rs249357428
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112417084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGCAGCC TCACCATCTC
  CCGTGGGTGT GGACTGACTG CCTACAGTGG AGGCATTCAC TCCATCTGAT CCCCCAAGCA
  TGCTCAAAAC AGCAGCCCCA TGACTGCCCA TTTTACAGAA GAGAATACTG AGGCCTATCA
  GAAAGAGGAA GGCCATGCTA CATTAACCAG GGCCGGAAAG GCCAAGCCCG GGCAGGTGTG
  K
  AGCCCCTACT GGGACACTCG CTGCAGGATG GGTGTTGATA AAGGTCCGAG AGGGAACGCT
  GGCAGGCGGC CTTAACACCT TTCCTGCTCC CTTTCCAGAT GGGTCGGCTA CCAGTACCCA
  GGTTACCGTG GCTACCAGTA TCTGCTGGAG CCTGGCGACT TCCGGCACTG GAACGAGTGG
  GGCGCCTTCC AGCCGCAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366277558	MGP_WTSI_5_112698238	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249357428					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366277558	MGP_WTSI_5_112698238	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112417084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	54 bp proximal
Cpgi16257	CpG island 16257	1967 bp proximal
Crybb1	crystallin, beta B1	within coordinates
Gm46941	predicted gene, 46941	1503 bp downstream
Tssr47978	transcription start site region 47978	1693 bp downstream
Tssr47979	transcription start site region 47979	1661 bp downstream
Tssr47980	transcription start site region 47980	92 bp upstream
Tssr47981	transcription start site region 47981	239 bp upstream
Tssr47982	transcription start site region 47982	256 bp upstream
Tssr47983	transcription start site region 47983	270 bp upstream
Tssr47984	transcription start site region 47984	279 bp upstream
Tssr47985	transcription start site region 47985	290 bp upstream
Tssr52559	transcription start site region 52559	1856 bp upstream
Tssr52560	transcription start site region 52560	1817 bp upstream
Tssr52561	transcription start site region 52561	267 bp downstream
Tssr52562	transcription start site region 52562	311 bp downstream