rs249366528 SNP Detail

Summary

• ID
  rs249366528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83466677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGTGAG GGTCTCTAAG
  GACTCATGGA GTGACTCTGC TAGCTGTTTC CTTCTCTACA CCCTGAAGTA TCCCCCCTCC
  CACCTGGTGA GATCCAAGAA TGGGTCTTCT CTGGAAGTCT ATCCACCAGG CCATCTAAGA
  TCCTGGAGGC TCCCCCTCCC CATAACACAC AATGAGTGAA TTTGACACTT ACATGATGCC
  Y
  GGCCTGGTAC ACCCACCACT GGTGGGAAAA TAACCTATAA ATCTTGAACA CTGAATCCGT
  GAGTTATAGG ACAGGCAGCA ATCTGAAGAG TCTTGAAAGC CTGCAAGAAA ACAAGGGGGC
  ACTCAAAGGC CAGGTCATTG CTGGGGTGAT GGTCCCATGG GGGCATAAGA AGGCCCCGGG
  ACTCAGGGGA GGCTTCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072525	MGP_WTSI_11_83389353	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249366528					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072525	MGP_WTSI_11_83389353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83466677 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	1171 bp downstream
Tssr103715	transcription start site region 103715	1121 bp downstream
Tssr103716	transcription start site region 103716	485 bp downstream
Tssr109678	transcription start site region 109678	1786 bp upstream
Tssr109679	transcription start site region 109679	1502 bp upstream
Tssr109680	transcription start site region 109680	1251 bp upstream
Tssr109681	transcription start site region 109681	1132 bp upstream
Tssr109682	transcription start site region 109682	857 bp upstream
Tssr109683	transcription start site region 109683	809 bp upstream
Tssr109684	transcription start site region 109684	783 bp upstream
Tssr109685	transcription start site region 109685	742 bp upstream
Tssr109686	transcription start site region 109686	673 bp upstream
Tssr109687	transcription start site region 109687	619 bp upstream
Tssr109688	transcription start site region 109688	578 bp upstream
Tssr109689	transcription start site region 109689	536 bp upstream
Tssr109690	transcription start site region 109690	527 bp upstream
Tssr109691	transcription start site region 109691	513 bp upstream
Tssr109692	transcription start site region 109692	485 bp upstream
Tssr109693	transcription start site region 109693	368 bp upstream
Tssr109694	transcription start site region 109694	12 bp downstream
Tssr109695	transcription start site region 109695	62 bp downstream
Tssr109696	transcription start site region 109696	1096 bp downstream
Tssr109697	transcription start site region 109697	1286 bp downstream