rs249379055 SNP Detail

Summary

• ID
  rs249379055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:63568746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACAGAGC TCTGTGAGGA
  CACTTTCTGA TTCCTCGAGA GTGGCCACAT CCCAACAGAG CTCACTCCTC AAGCCCTTAC
  ATCCTCCTAC CCGTTGTGTG CTGTCACAGG TCCAGGGGAC AGGGACCAAG CTCCCACTCT
  TGCCTGCCTA ATAGCACAGC CTATTCCTAT TGCAGCCCCA CCCCACCCCA CCCCCCACCC
  Y
  GCCAACCCTG AACCCCAGGA TGCATCTTTC CTTGGATAAA CCTTGGTGTT TATACAGAAC
  CATCGTGGGG TCTGGCCAGC CCATAGTGGG TGCTCTGGCT GAACTCCCAC TCTCCTCCTT
  TAGAACAAGA AGGGAGGAGC ATACATATCC AACCAGCAGC TGCTCACTGT ACCCAGCGGT
  GGGCAGGACT GCAACTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371645134	MGP_WTSI_7_71063884	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249379055					SNP	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371645134	MGP_WTSI_7_71063884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63568746 () rs orientation: forward

Symbol	Name	Function Class
E030018B13Rik	RIKEN cDNA E030018B13 gene	Intron
Gm53391	predicted gene, 53391	30 bp upstream
Klf13	Kruppel-like transcription factor 13	Intron
Rr647716	regulatory region 647716	736 bp distal
Tssr66989	transcription start site region 66989	1750 bp downstream
Tssr72768	transcription start site region 72768	20 bp upstream