rs249380680 SNP Detail

Summary

• ID
  rs249380680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15538534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTAGTG GAGTGCCTAT
  CCTTTGCCTT TGAGTGTATT CTTTCATTGG TTTTTCTTGA CCTTTTAAAA GAGTCGATTG
  AGCATGAAAT TTAGTACGAA GTCCAAAAAC AGGAGCTGGA GAACTGGCCC AGCAGTTGGA
  GGTCATCATG CTTAGAGTGC ATAGAGAGGA CCCAGCACCG GTCAGGTAGC TCAAAACCAC
  Y
  TAGTCCCAGG GCAATCAGAT GCCCTCTTCT TCCCTGGCAC CTACATGCCT CAACACACGC
  ACTCGCGCGT GCGCGCGCGC GCACACACAC ACACACACAC ACACACACAC ACTCACAAAG
  TTGTCCCATT AGTGGACTAA TTTAAAAGGA TAAATGAACA AAGTGTTAAA ATGAACTTAA
  CCTTCCTAAG AAGTATATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376737700	MGP_WTSI_9_15431682	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249380680					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376737700	MGP_WTSI_9_15431682	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15538534 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	483 bp proximal
Deup1	deuterosome assembly protein 1	within coordinates
Rr674358	regulatory region 674358	405 bp proximal
Rr674359	regulatory region 674359	655 bp proximal
Rr674360	regulatory region 674360	708 bp proximal
Tssr83870	transcription start site region 83870	687 bp upstream
Tssr88249	transcription start site region 88249	582 bp downstream
Tssr88250	transcription start site region 88250	602 bp downstream
Tssr88251	transcription start site region 88251	632 bp downstream
Tssr88252	transcription start site region 88252	659 bp downstream
Tssr88253	transcription start site region 88253	672 bp downstream
Tssr88254	transcription start site region 88254	1045 bp downstream
Tssr88255	transcription start site region 88255	1088 bp downstream