rs249399820 SNP Detail

Summary

• ID
  rs249399820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6154924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGTTTA TAGTATTATA
  AGACATTAAC CCTGCATTTA CCTCAGTCCT TCTATATGTG ACTGGTAGCA CCCAGAATTG
  GTAGGGGTAT TGTATGGCTG TGGCTTGGCT CAGGGCAGCC TAGGGGATGT AGGCATTTAT
  TCTTTGTGAG GCATGCTGTG TTTCCAGTAA TGAAGTCTAA GTTGGCACAA ACAGTTTTGG
  Y
  TCTCAGAACA CATGGAAAGA TGAAAGGCTT GTATCTTATT CTCCAAGAGC TCTGGCTCCT
  TTGCCATCTC CTGATGCTCA GGATCCAGTT TCCATGTGCT TGTGCTAAGT ACCTTGGTGT
  CTGAAGGGTT CAATCAGCAA ATTCTTTGGG CTTTAAATTT TGTTACAGCC AGGAGGGCAG
  GGAGGTACCC ACAGACATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397548369	MGP_WTSI_17_6104649	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249399820					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397548369	MGP_WTSI_17_6104649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6154924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	1703 bp proximal
Gm65964	predicted gene, 65964	1440 bp downstream
Tssr142458	transcription start site region 142458	1815 bp upstream
Tssr142459	transcription start site region 142459	1872 bp upstream
Tssr142460	transcription start site region 142460	1915 bp upstream
Tssr142461	transcription start site region 142461	1959 bp upstream
Tssr146313	transcription start site region 146313	1629 bp downstream
Tssr146314	transcription start site region 146314	1826 bp downstream
Tssr146315	transcription start site region 146315	1840 bp downstream
Tulp4	TUB like protein 4	1604 bp upstream