rs249401574 SNP Detail

Summary

• ID
  rs249401574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142946827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAACATCT ACAGCGTTAC
  CCGCAAGCGC TACGCGCATC TGAGCGCGCG GCCGGCCGAC GAGATCGCGG TAGACCGCGA
  CGTGCCTTGG GGCGTCGACT CGCTCATCAC CTTGGCCTTC CAGGACCAAC GCTACAGTGT
  GCAGACGTCC GACCACCGCT TCCTGCGCCA CGACGGGCGC CTTGTGGCAC GGCCGGAGCC
  Y
  GCCACGGGCT TCACGCTGGA GTTCCGCTCC GGCAAGGTGG CCTTTCGCGA CTGCGAAGGT
  CGCTACCTGG CTCCGTCCGG GCCCAGCGGC ACCCTCAAGG CTGGCAAGGC CACCAAGGTG
  GGCAAAGATG AGCTCTTCGC CCTGGAACAG AGCTGCGCTC AGGTGGTGCT GCAGGCGGCC
  AACGAGAGGA ACGTGTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367003287	MGP_WTSI_5_143722751	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249401574					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367003287	MGP_WTSI_5_143722751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142946827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	within coordinates
Cpgi16968	CpG island 16968	727 bp proximal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	1881 bp downstream
Rr378736	regulatory region 378736	within coordinates
Rr624074	regulatory region 624074	686 bp distal
Rr624075	regulatory region 624075	752 bp proximal
Tssr49613	transcription start site region 49613	709 bp downstream
Tssr49614	transcription start site region 49614	579 bp downstream
Tssr49615	transcription start site region 49615	82 bp downstream
Tssr49616	transcription start site region 49616	52 bp downstream
Tssr49617	transcription start site region 49617	116 bp upstream