CTGAA AGAAAAATTA AAAAAAAAAA M CATCTTAAGC TTCCTAGGGG CCTTT M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
B10.RIII-H2 |
BALB/cJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss916298942 | MGP_WTSI_3_95108687 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | C | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
B10.RIII-H2 |
BALB/cJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
SWR/J |
WSB/EiJ |
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rs249402861 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | C | A | A | A | A | A | A | C | A | A | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss916298942 | MGP_WTSI_3_95108687 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/C |
Location: Chr3:95015998 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13496 | CpG island 13496 | 1576 bp distal | ||||||
Gm65644 | predicted gene, 65644 | 1555 bp downstream | ||||||
Pip5k1a | phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha | 1757 bp upstream | ||||||
Rr367478 | regulatory region 367478 | 827 bp downstream | ||||||
Rr580812 | regulatory region 580812 | 1919 bp distal | ||||||
Rr580813 | regulatory region 580813 | 1267 bp distal | ||||||
Rr580814 | regulatory region 580814 | 1037 bp distal | ||||||
Rr580815 | regulatory region 580815 | 564 bp distal | ||||||
Rr580816 | regulatory region 580816 | 1845 bp proximal | ||||||
Tssr34417 | transcription start site region 34417 | 1790 bp upstream | ||||||
Tssr34418 | transcription start site region 34418 | 1765 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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