rs249406097 SNP Detail

Summary

• ID
  rs249406097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121982541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATTAATT AGGGTGGCTT
  GATCAGCTAC AGAAGGATCC TTTGGGGTCA CATTCTTTTA TCCTGTGGAC TGGCAGGAAG
  GAGGAACGTA GCCATGTCAC TGGCCCTCTA AAGGGAGAAC AGCACCTTTG TGCATGCAGC
  AAGGCAGGTA GGCAGGTAGG CAGGTAGGCA GGCGGGTGGT CAGTTACACA GCCTGCATGG
  R
  TTTGCCGACC TTCTGTTTTA ACCCTGCCAG TTCTGCTGAG AAGGCCTGGG ACGATGAGCT
  TGCTGTCTTT GTACAGCAGT GGCCTTGCTC CTCACCCAGA GGAGCCGAGT GACAGAGCTC
  TGCGGGTACA TCTTAGCCCT TTCAGTCTCT AGTTGGTAGG CACTAGATTT ACCTTCTGGA
  GGCTTCCGGA CACTCAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480740	MGP_WTSI_2_121977796	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249406097					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480740	MGP_WTSI_2_121977796	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121982541 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19810	transcription start site region 19810	1451 bp downstream
Tssr19811	transcription start site region 19811	1174 bp downstream
Tssr19812	transcription start site region 19812	1130 bp downstream
Tssr19813	transcription start site region 19813	1112 bp downstream
Tssr19814	transcription start site region 19814	1094 bp downstream
Tssr19815	transcription start site region 19815	1080 bp downstream
Tssr19816	transcription start site region 19816	1059 bp downstream
Tssr19817	transcription start site region 19817	1034 bp downstream
Tssr19818	transcription start site region 19818	975 bp downstream
Tssr19819	transcription start site region 19819	956 bp downstream
Tssr19820	transcription start site region 19820	548 bp upstream
Tssr19821	transcription start site region 19821	579 bp upstream
Tssr19822	transcription start site region 19822	691 bp upstream
Tssr19823	transcription start site region 19823	724 bp upstream
Tssr19824	transcription start site region 19824	779 bp upstream
Tssr19825	transcription start site region 19825	802 bp upstream
Tssr19826	transcription start site region 19826	842 bp upstream
Tssr19827	transcription start site region 19827	871 bp upstream
Tssr19828	transcription start site region 19828	908 bp upstream
Tssr19829	transcription start site region 19829	952 bp upstream
Tssr25955	transcription start site region 25955	1138 bp upstream
Tssr25956	transcription start site region 25956	1062 bp upstream
Tssr25957	transcription start site region 25957	930 bp upstream
Tssr25958	transcription start site region 25958	802 bp downstream
Tssr25959	transcription start site region 25959	1002 bp downstream