rs249412859 SNP Detail

Summary

• ID
  rs249412859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGGATCC CAATAATCTC TGTGCAGAGG
  AATCACCCCC TGGTTCCTAA GCTTCCCTAA ATAAGGCCTA TCATACTCTT GAGTGTGAGT
  CTCAGTACCT CAAATCCCAG ACACAAAAGC CTCTAAGGTC ACAAGTATCC CCTCAGCACC
  K
  GTCACAACAC ACCCCCTAGC TGGTGTTACA TACTTGGCTT CTGGAGATTT GAAGTTGAAT
  GGCACACACT AGAAGGCTTG GAGAGCAGCA AGCAAAAGAT ACTTTTCATT AAGGGCAACC
  GTCTGTGGCT TATTAATCAC TCATGTTCCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320920387	CHEV_3_123210180	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249412859					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300911 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	676 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	665 bp downstream
Rr397991	regulatory region 397991	228 bp downstream
Rr584523	regulatory region 584523	343 bp distal
Rr584524	regulatory region 584524	208 bp distal
Rr584525	regulatory region 584525	1112 bp proximal
Rr584526	regulatory region 584526	1657 bp proximal
Snhg8	small nucleolar RNA host gene 8	290 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	675 bp downstream
Tssr31551	transcription start site region 31551	1288 bp upstream
Tssr31552	transcription start site region 31552	1326 bp upstream
Tssr35502	transcription start site region 35502	1068 bp downstream
Tssr35503	transcription start site region 35503	1653 bp downstream