rs249419393 SNP Detail

Summary

• ID
  rs249419393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156136161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATATGGA TCCACATTCC
  TGTCATCTTT CAGAGCCTTG CAAGGATCAC AATAACTTGA CAGGGGCTAC ATGGTGCTTC
  CAAAAACCAG GACCATATCC TGGAGTCCAT GACCGTGCCT TTCTAAAAAT AGAAATCTGT
  ACAGATGTCA CTGAGTTAGA ATTTTGGGTG CAGTCATCTT GTGTCAACCA GCCGTACTCT
  W
  AACCCAGTGA CTGGTGACCT CTTTAGAGGG AAGCAGAGAT AAGGGTATGT GACTGTAAGC
  CACAGGACCT GTGAACTAAG ACGAGGAAGA CACTTGAAGA CTCCCTCTAG GGCCTTCTTG
  AGGTTCTAGG GGCATATCTT GGAAATTCTG GAAGACAACT GTTGTCTTTG GCTACCCTGT
  AAATCTCCTC ACCTTCAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444931	CHEV_4_155425813	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249419393					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156136161 () rs orientation: forward

Symbol	Name	Function Class
Gm13648	predicted gene 13648	1011 bp downstream
Rr93557	regulatory region 93557	760 bp distal
Rr97568	regulatory region 97568	53 bp proximal
Rr106662	regulatory region 106662	1441 bp distal
Tssr45000	transcription start site region 45000	1231 bp upstream
Tssr45001	transcription start site region 45001	1198 bp upstream
Tssr45002	transcription start site region 45002	943 bp upstream
Tssr45003	transcription start site region 45003	932 bp upstream
Tssr45004	transcription start site region 45004	908 bp upstream
Ttll10	tubulin tyrosine ligase-like family, member 10	887 bp upstream