rs249420744 SNP Detail

Summary

• ID
  rs249420744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158226295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAATCTC TGAGCCATCT
  CTCCAGCCCC CAGGAGAGTC TTCTTGAACT CAAAATTCAA ATTGCCCTAA AATGTAAAGA
  TCCCAAATCT TACATAAATA GCCTTAGGTT TAAATCTTTC AAAGTTAATG TGAATTAAGT
  AGGATTTGCT TGTGGTTTAG TTTTGTGCCT GCCCTTGGTC TGACGTAAAG GAGCAGACAA
  R
  GGAAGAAGTT AGGGGAGGCT CAAGAGCCCT GCCTTCTGTT CAAGGCTCAT GTTACACAGT
  ATTCCAAGTT TCTAGTGCAT ATTAGTAGTG AGAGGTTCTC GCATCAGTGT GACATCTACA
  ACTGTGTCTG GGGCCTTGTC TTCTGTCTGT AGAGACCTGT GCTCGTGTAC ACTGCAGGCA
  TGTATTATGC CTCTCCCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281288	MGP_WTSI_2_158210111	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249420744					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281288	MGP_WTSI_2_158210111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158226295 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21319	transcription start site region 21319	1787 bp downstream
Tssr21320	transcription start site region 21320	1751 bp downstream
Tssr21321	transcription start site region 21321	1641 bp downstream
Tssr21322	transcription start site region 21322	1518 bp downstream
Tssr21323	transcription start site region 21323	1474 bp downstream
Tssr21324	transcription start site region 21324	1436 bp downstream
Tssr21325	transcription start site region 21325	1400 bp downstream
Tssr21326	transcription start site region 21326	1376 bp downstream
Tssr21327	transcription start site region 21327	1339 bp downstream
Tssr21328	transcription start site region 21328	1293 bp downstream
Tssr21329	transcription start site region 21329	1280 bp downstream
Tssr21330	transcription start site region 21330	1191 bp downstream
Tssr21331	transcription start site region 21331	681 bp downstream
Tssr21332	transcription start site region 21332	546 bp downstream
Tssr21333	transcription start site region 21333	516 bp downstream
Tssr21334	transcription start site region 21334	242 bp upstream
Tssr21335	transcription start site region 21335	598 bp upstream
Tssr21336	transcription start site region 21336	652 bp upstream
Tssr21337	transcription start site region 21337	756 bp upstream
Tssr21338	transcription start site region 21338	1323 bp upstream
Tssr27228	transcription start site region 27228	1157 bp upstream