rs249422062 SNP Detail

Summary

• ID
  rs249422062
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGCAGG CACTATGCTA
  ACTGCTTTAC AAATACTACT TTTTCAAGGC AATATACATG TATACAAGTA TATATGTGTA
  TACACACACA TCTACACAAC CACCAGTCTA AGGAAAAGGG AAAGCAGAAA ATGAGCCCAT
  CCAATGGGAT TCTGCTCCGG TGTTTGAGGA ACCAGCTCAT TCTGTGTCTG ATTCCCTATC
  W
  AGACATTGTG ACCTTAGAAG GTACAATCAT TTCCTCACAG CTGATCTTAT CTCTTACACT
  CAAAGGTGCA GCCCTTAGAG ACCAGGATGT CCTTTTGCTC ATGACAATTA CTGACAGTTT
  GTCGTTGCCA CCACTATGTA AACCCAGGTC TGTACCTGTC TCTCTATTTA CATATGGGAG
  CAGAGCTGTC TCTTCATCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384338905	MGP_WTSI_11_94939109	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249422062					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384338905	MGP_WTSI_11_94939109	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	510 bp distal
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	994 bp upstream
Rr454945	regulatory region 454945	1357 bp distal
Rr454946	regulatory region 454946	1621 bp distal
Rr454947	regulatory region 454947	1355 bp distal
Rr454948	regulatory region 454948	1092 bp distal
Rr454949	regulatory region 454949	824 bp distal
Rr454950	regulatory region 454950	424 bp distal
Rr454951	regulatory region 454951	within coordinates
Rr454952	regulatory region 454952	345 bp proximal
Rr454953	regulatory region 454953	1367 bp proximal
Tssr3652	transcription start site region 3652	1179 bp upstream
Tssr104346	transcription start site region 104346	844 bp downstream
Tssr110254	transcription start site region 110254	1206 bp upstream
Tssr110255	transcription start site region 110255	1140 bp upstream
Tssr110256	transcription start site region 110256	1073 bp upstream
Tssr110257	transcription start site region 110257	977 bp upstream