rs249428362 SNP Detail

Summary

• ID
  rs249428362
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:66684365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCACC TAGCACAGCA
  CCTTGTCCTT TATAGGCAGC TCCTCAGATC CTCTGAGCAT TCACTGTGCT GAGGCAGTTC
  TTCACCAGAA CTTTTCCCTG CTCAATTTCA GGGGTCCTTT TCTAGCTCCC CAAAGCCCAG
  TCCTAACAGC TGTACCTCCA GAGGGCTCCT AAAGTCTCTC CTGTCCCTGT CCCAGCCACA
  K
  TTCTCTAAAT ACCTTTAGAC GCAGACCATG GCCTCTCCTG GGAGTTGGCA GTAGAGAGTC
  AATGGGTACA GGGTCACCAG CTCTCCATCA GCTGCTGCTG CTCCAGGCTG AGTGGGTCAC
  ACAGGCTCCG GAGGGAGCGC AGGCAAAGCC CATGTTATCA AGCAGGCTGC AGAGTTGTAG
  TTGCTAAAGG GCCTCACACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325003329	CHEV_15_66644078	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249428362					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66684365 () rs orientation: forward

Symbol	Name	Function Class
Rr369944	regulatory region 369944	1424 bp upstream
Rr503567	regulatory region 503567	1542 bp distal
Rr503568	regulatory region 503568	750 bp distal
Rr503569	regulatory region 503569	within coordinates
Rr503570	regulatory region 503570	67 bp proximal
Rr503571	regulatory region 503571	1568 bp proximal
Rr503572	regulatory region 503572	1614 bp proximal
Sla	src-like adaptor	within coordinates
Tg	thyroglobulin	within coordinates
Tssr131484	transcription start site region 131484	272 bp downstream
Tssr131485	transcription start site region 131485	138 bp downstream
Tssr134584	transcription start site region 134584	1889 bp upstream
Tssr134585	transcription start site region 134585	413 bp upstream
Tssr134586	transcription start site region 134586	381 bp upstream
Tssr134587	transcription start site region 134587	302 bp upstream
Tssr134588	transcription start site region 134588	121 bp downstream
Tssr134589	transcription start site region 134589	143 bp downstream
Tssr134590	transcription start site region 134590	169 bp downstream
Tssr134591	transcription start site region 134591	200 bp downstream
Tssr134592	transcription start site region 134592	681 bp downstream