rs249430880 SNP Detail

Summary

• ID
  rs249430880
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72020629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGCCT TCCTTCCATC
  TCCCAGGTCT CTGTGTCCCG CTGCAATCTC CACTTGCTAT GCAGCCAGTG TTGACCTTGG
  AGTTCCCACC CCTGCCTTGT TTATGAGGCA AAGGCAGGAC CCCAGGATTT CCTGCTTTCT
  GGGCAAGCAT TCTACCAAGT GCGGCTCTTC TTCCACACCT TCAGCTTTCC CAGTCAGGAA
  S
  GGTCTAGCTT TATAGCTCAG GCCTCCTCAG CCTCACAAGC CTCTTCCTCC CTCTTCCTAA
  AATGGGGCTC AGAGGCAAGC CACCAGCCTT TATTTTCATT TCTTTGTATG TATGTACATA
  TGTGTGTGCA AACGTATGAT GTGCTGTGTG TGGAAGTCAG AAAACAACTC TTGGGAGTTC
  TCTTTCACCA TGTGGGTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375117420	MGP_WTSI_8_74091884	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249430880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375117420	MGP_WTSI_8_74091884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72020629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	1374 bp proximal
Nxnl1	nucleoredoxin-like 1	1384 bp upstream
Rr665115	regulatory region 665115	407 bp proximal
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	897 bp upstream
Tssr77870	transcription start site region 77870	881 bp upstream
Tssr77871	transcription start site region 77871	972 bp upstream
Tssr77872	transcription start site region 77872	1672 bp upstream
Tssr81733	transcription start site region 81733	1373 bp upstream
Tssr81734	transcription start site region 81734	1359 bp upstream
Tssr81735	transcription start site region 81735	1353 bp upstream
Tssr81736	transcription start site region 81736	1345 bp upstream
Tssr81737	transcription start site region 81737	1333 bp upstream
Tssr81738	transcription start site region 81738	1478 bp downstream