rs249434143 SNP Detail

Summary

• ID
  rs249434143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53860947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGTGACT TTCCCTGGGA TCCTGCCTCT
  GTTCTGGACG ATCCTCACTG TCCTGTGTAG GGTCATCTTT CCCGCTACCC CACACTGTAT
  TTGCCCTTCA TTGAACGTAA AGGCAGTCAG AAGCCTGGGG GGTGGAAGGG GCTGGAGCAC
  Y
  CCTCACCTCT CCCCAGCCTC CTGGAGGTGA ATAATCCAAC ACACTTAACT GTTCCTTTAA
  AACTTTTATT TTTTAAATCA CCTAAATCAT TCTTCCAGTC CTCTTCTGGA GCTTTCTAAA
  TTCTTCTTTC GGTCCCCAGA ACTAAATGTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324044505	CHEV_12_54915151	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249434143					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53860947 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	747 bp distal
Rr267638	regulatory region 267638	1348 bp distal