rs249439041 SNP Detail

Summary

• ID
  rs249439041
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115051229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCATGCC AAGATCCAGG
  TCAGAAACTT GTGTCTTCCA GCCTCAAGAC CTGGATCACA GGTGAGCCCT CCAATTCTGG
  ATTGTAGTTC ATCCCAGATA TAGTCAAGCT GACACCCAGG AATAGCCATT ACAACAGGCA
  AGAGTAGATC CACCCCAGCC CCTCATTAAA TACAGAAATC AGTTTACGTA TCGGCCCCTT
  S
  ATACATGCAG AATCCCATGC ATTTCTGTGA ATGATATACC AAAAAAATCT CACAGACGAT
  GCCATCTGGC TATTTTCACA GATGCCTTGG AGTTGGACGG ACTTGTAGAA ATAACAACCC
  TTCCACTTTT ACAGCTAGGA AAAAAAAAAA AAAAAGCTTA AAACACATTA GCTGGGGAGG
  GGCGGGGGCT GGAGAGATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366345421	MGP_WTSI_5_115363178	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249439041					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366345421	MGP_WTSI_5_115363178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115051229 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	934 bp downstream
Tssr48141	transcription start site region 48141	1895 bp downstream
Tssr48142	transcription start site region 48142	1805 bp downstream
Tssr48143	transcription start site region 48143	1762 bp downstream
Tssr48144	transcription start site region 48144	1722 bp downstream
Tssr48145	transcription start site region 48145	1655 bp downstream
Tssr48146	transcription start site region 48146	1589 bp downstream
Tssr48147	transcription start site region 48147	1574 bp downstream
Tssr48148	transcription start site region 48148	1508 bp downstream
Tssr48149	transcription start site region 48149	1488 bp downstream
Tssr48150	transcription start site region 48150	1475 bp downstream
Tssr48151	transcription start site region 48151	1433 bp downstream
Tssr48152	transcription start site region 48152	1375 bp downstream
Tssr48153	transcription start site region 48153	1285 bp downstream
Tssr48154	transcription start site region 48154	1269 bp downstream