rs249441666 SNP Detail

Summary

• ID
  rs249441666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66212621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGTGTCT GCAGGAGCGG
  CTCAGGGCTG GTCGGCCAGC AGGTGAGAAG GAGAGATGTC CACAGCCTGG GTTCTGGATG
  GGGAATGTGG AGAATCCATG AAATAGGCCT CATTCCATAT GCTGGGTACA GTTGATTAGC
  ATTGCTTGAC TGCACATCGT TCTAGTGTCA TGGTCGATTG GTGATGTCTG CTTGGCAGGT
  R
  CCATCTCTTT CAAGACCTTT AACTGGTTGG GTAAAATGGC CTTATGGGAT GGTAGAATCC
  TGTGTTAGAA TAGGAAAAGG GAATTAAAAA ATATTTAGTC TATTTGCATT AATTCTATCC
  CTACCTGTGA GATTCACTTG GTTGGAACTC AGTAAAATTC ACTGTTTCCT CAAGGCTGAG
  CAGCTAAGCA GGAGTGGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367416	MGP_WTSI_14_66594009	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249441666					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367416	MGP_WTSI_14_66594009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66212621 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126263	transcription start site region 126263	1845 bp downstream
Tssr126264	transcription start site region 126264	1804 bp downstream
Tssr126265	transcription start site region 126265	1776 bp downstream
Tssr126266	transcription start site region 126266	1737 bp downstream
Tssr126267	transcription start site region 126267	910 bp downstream
Tssr126268	transcription start site region 126268	256 bp downstream
Tssr126269	transcription start site region 126269	194 bp downstream
Tssr126270	transcription start site region 126270	410 bp upstream
Tssr126271	transcription start site region 126271	428 bp upstream
Tssr126272	transcription start site region 126272	453 bp upstream
Tssr126273	transcription start site region 126273	480 bp upstream
Tssr126274	transcription start site region 126274	524 bp upstream
Tssr126275	transcription start site region 126275	533 bp upstream
Tssr126276	transcription start site region 126276	566 bp upstream
Tssr126277	transcription start site region 126277	631 bp upstream
Tssr126278	transcription start site region 126278	667 bp upstream
Tssr126279	transcription start site region 126279	1728 bp upstream
Tssr126280	transcription start site region 126280	1758 bp upstream
Tssr129260	transcription start site region 129260	1813 bp upstream
Tssr129261	transcription start site region 129261	1774 bp upstream
Tssr129262	transcription start site region 129262	1761 bp upstream
Tssr129263	transcription start site region 129263	1745 bp upstream
Tssr129264	transcription start site region 129264	1692 bp upstream
Tssr129265	transcription start site region 129265	278 bp upstream
Tssr129266	transcription start site region 129266	245 bp upstream
Tssr129267	transcription start site region 129267	229 bp upstream
Tssr129268	transcription start site region 129268	163 bp upstream
Tssr129269	transcription start site region 129269	526 bp downstream
Tssr129270	transcription start site region 129270	547 bp downstream
Tssr129271	transcription start site region 129271	591 bp downstream
Tssr129272	transcription start site region 129272	1763 bp downstream