rs249448835 SNP Detail

Summary

• ID
  rs249448835
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCATGCA GTCAGGGAGG
  GTCACTCAAA CTCAGGGAGC CCCTCTGGGG CCCCTTTCTC ACCTCTCGTG TGCCCACACT
  ACTTCAGGAT GCAGGCCCAG CAGCCGGCCC ATGATACCTT GCTCAGCATC GGCTAGCCCA
  CCAGGACTGT CAATCAGGAC ACTTGGGAGG AGGCTTTTCC CATCATGTGA TTTTATCCCT
  R
  AACCTGGGAC TGAGGAACAG GTACTAACAA GGGGAGAGGG GCCAGGGGAG ATCAGGTACC
  GACATTGCCT AGATGGGGAT CGGGACCACC CAGAATCCAA AGGCTCACGA TGAAACTATC
  ATAACACTTA CTTATCGTCA TTGACTTAGA GTTTGGTCCC GTACAGCTTT GGCTGCTGTA
  CTGAAGAGAC TACCAAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394626507	MGP_WTSI_15_76846952	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249448835					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394626507	MGP_WTSI_15_76846952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900722 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	624 bp downstream
Gm52199	predicted gene, 52199	1462 bp upstream
Mb	myoglobin	Intron
Rr504918	regulatory region 504918	1036 bp distal
Tssr131853	transcription start site region 131853	735 bp downstream
Tssr131854	transcription start site region 131854	684 bp downstream
Tssr131855	transcription start site region 131855	566 bp downstream
Tssr131856	transcription start site region 131856	486 bp downstream
Tssr131857	transcription start site region 131857	1109 bp upstream
Tssr131858	transcription start site region 131858	1185 bp upstream
Tssr135064	transcription start site region 135064	444 bp upstream
Tssr135065	transcription start site region 135065	1122 bp downstream