rs249454754 SNP Detail

Summary

• ID
  rs249454754
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5742616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACACCA AGGCCAAAGA
  AAATGTAATG AGGCTCTAGG CCAGATCTCT CTTTCCCATG GTTAAGATCC GTGGGCCCAA
  AAGGCCTCAG AGGATTTAAG TGGTGTGTCA ATGTTATGTC TATGTCAATG TCTTGGTTAC
  CTCAGAGTCA TAGTTACAGG CTGAGCAAAG AGTAACTGCA CCTCCAGATA TTCTGCCTGC
  M
  TCTTTTCTCA CAGGCCTAGC CTTTTGAGCT TTCGTTGCAT CTTTACCCTT CTCTTTTTTC
  TGTATCATGT GTAATCATTT TAAAATTCTG CCTTTATCTG TGCTCTGTTC CAGTGCTAAA
  GTACAATTAT GCTCATTCAA TAGAAGAGCA TTTTCCATAG TACCAGTACA ATAAGAGTGA
  TTTCATGAAG CTCCTCATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363869326	MGP_WTSI_5_5692616	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249454754					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363869326	MGP_WTSI_5_5692616	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5742616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15524	CpG island 15524	998 bp proximal
D5Mit417	DNA segment, Chr 5, Massachusetts Institute of Technology 417	251 bp distal
Gm40262	predicted gene, 40262	within coordinates
Rr607034	regulatory region 607034	831 bp proximal
Rr607035	regulatory region 607035	1426 bp proximal
Rr607036	regulatory region 607036	1952 bp proximal
Steap2	six transmembrane epithelial antigen of prostate 2	within coordinates
Tssr50064	transcription start site region 50064	1408 bp downstream
Tssr50065	transcription start site region 50065	1653 bp downstream
Tssr50066	transcription start site region 50066	1820 bp downstream
Tssr50067	transcription start site region 50067	1864 bp downstream
Tssr50068	transcription start site region 50068	1883 bp downstream
Tssr50069	transcription start site region 50069	1943 bp downstream