rs249463846 SNP Detail

Summary

• ID
  rs249463846
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103287381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA GTATGATGTG TATATAACTT
  S
  ATATGCAAAC ATAATGCCTT CTTGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss643914931	FVB_NJ_14_103449162	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	G	G	G	C	C	C	G	C	G	C	C	C	C	G	C	C	C	G	C	G	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249463846					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	G	G	G	C	C	C	G	C	G	C	C	C	C	G	C	C	C	G	C	G	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss643914931	FVB_NJ_14_103449162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103287381 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	within coordinates
Gm41235	predicted gene, 41235	1205 bp upstream
Rr404266	regulatory region 404266	1516 bp upstream
Rr496962	regulatory region 496962	798 bp distal
Rr496963	regulatory region 496963	1561 bp proximal
Rr496964	regulatory region 496964	1613 bp proximal
Rr496965	regulatory region 496965	1660 bp proximal
Tssr4512	transcription start site region 4512	850 bp downstream
Tssr126972	transcription start site region 126972	1040 bp downstream
Tssr126973	transcription start site region 126973	913 bp downstream
Tssr126974	transcription start site region 126974	683 bp downstream
Tssr126975	transcription start site region 126975	669 bp downstream
Tssr126976	transcription start site region 126976	646 bp downstream
Tssr126977	transcription start site region 126977	621 bp downstream
Tssr126978	transcription start site region 126978	579 bp downstream
Tssr126979	transcription start site region 126979	560 bp downstream
Tssr126980	transcription start site region 126980	548 bp downstream
Tssr126981	transcription start site region 126981	337 bp downstream
Tssr126982	transcription start site region 126982	279 bp downstream
Tssr126983	transcription start site region 126983	242 bp downstream
Tssr126984	transcription start site region 126984	69 bp downstream
Tssr126985	transcription start site region 126985	356 bp upstream
Tssr126986	transcription start site region 126986	1089 bp upstream
Tssr126987	transcription start site region 126987	1128 bp upstream
Tssr126988	transcription start site region 126988	1345 bp upstream
Tssr126989	transcription start site region 126989	1368 bp upstream
Tssr126990	transcription start site region 126990	1575 bp upstream
Tssr126991	transcription start site region 126991	1647 bp upstream
Tssr126992	transcription start site region 126992	1872 bp upstream
Tssr126993	transcription start site region 126993	1891 bp upstream
Tssr126994	transcription start site region 126994	1913 bp upstream
Tssr126995	transcription start site region 126995	1954 bp upstream
Tssr130074	transcription start site region 130074	1563 bp upstream
Tssr130075	transcription start site region 130075	1524 bp upstream
Tssr130076	transcription start site region 130076	1509 bp upstream
Tssr130077	transcription start site region 130077	1238 bp upstream
Tssr130078	transcription start site region 130078	1211 bp upstream
Tssr130079	transcription start site region 130079	1190 bp upstream
Tssr130080	transcription start site region 130080	1478 bp downstream
Tssr130081	transcription start site region 130081	1533 bp downstream
Tssr130082	transcription start site region 130082	1560 bp downstream