rs249466082 SNP Detail

Summary

• ID
  rs249466082
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113617029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAACTGTT GCCACTTAAT
  CTCCTTTTGT TTTTTCAAGA CAGGGTTTCT TTGTGTAGCC CTAGCTGTCC TACTCCCTCT
  GTAGACCAGG CTGGCCTCAA ACTCAGAGAT CCACCTGCCT CGGCTTCCCA AGAGCTGGGA
  TTAAAGGTGT GCGCCACCAC TGCCTGGCAA TGATTTATGT GTGTGTGTTT ATGAATTTTA
  T
  TTGATTATAT TTTTGTCGTG CTTGGAATTG AGTCCAAGGC CTTGTGCCTG TCAGGCAAGC
  ATTTTGCCAG TGAGCTATAT AACTTCTTAA ATGAAATTAT GTGTGTGTGT GTTCCATTGT
  TGTTGTTGTT GTAATACAGG ATCTCATGTA GTCCAGGCTG GCCTAGAACT CATTACCTAG
  CTAAGAATGA CCTTGAATTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911262	CHEV_6_113590062	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249466082					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113617029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	1298 bp distal
Gm43964	predicted gene, 43964	494 bp downstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates
Rr399834	regulatory region 399834	1491 bp downstream
Rr636556	regulatory region 636556	1530 bp distal
Rr636557	regulatory region 636557	1678 bp distal
Rr636558	regulatory region 636558	1612 bp distal
Rr636559	regulatory region 636559	535 bp distal
Tssr58237	transcription start site region 58237	1524 bp downstream
Tssr62463	transcription start site region 62463	691 bp upstream