rs249466261 SNP Detail

Summary

• ID
  rs249466261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCCCTA GGTGGTCACA
  GAACAAATCC AGCCAGCCAG ATGCAGTGCT GCCTTTAGCT TTAGCTACCT TTGTGGAGTT
  ATGAATGGCA GACAGGATGG TATTCTTGAT GTCACCTAAA CTTAGGTTTA AAAAAGTTTT
  TATTTTTTCA TTTCCTTTTT CTGAACAGTA ACTCTTAATG TGGTATCTAA GGCAAAGCGT
  R
  TAAAGGGAAT CTATTAATTC CCCAAACACA TCAGGCTTAT TTTGTTCTGT TATAGAGCCA
  AATGTATGTT TCTCCAGGTT AGCTCTGTTT CGATTGAATT TAGGGCAGGT GGCTCGCATG
  TCTCCAGCTA ATTTTTGAGC TATTATTTTC CATATGGTGG CAGAGATAGC AGGAGTGAGC
  TTGCGCCATA GGAAGTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372628518	MGP_WTSI_7_113648709	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249466261					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372628518	MGP_WTSI_7_113648709	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104402 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1557 bp downstream
Tssr74117	transcription start site region 74117	1669 bp upstream
Tssr74118	transcription start site region 74118	1622 bp upstream
Tssr74119	transcription start site region 74119	1224 bp upstream
Tssr74120	transcription start site region 74120	1207 bp upstream
Tssr74121	transcription start site region 74121	1144 bp upstream
Tssr74122	transcription start site region 74122	1127 bp upstream
Tssr74123	transcription start site region 74123	1094 bp upstream
Tssr74124	transcription start site region 74124	1049 bp upstream
Tssr74125	transcription start site region 74125	1038 bp upstream
Tssr74126	transcription start site region 74126	1002 bp upstream
Tssr74127	transcription start site region 74127	851 bp upstream
Tssr74128	transcription start site region 74128	771 bp upstream
Tssr74129	transcription start site region 74129	240 bp upstream
Tssr74130	transcription start site region 74130	191 bp upstream
Tssr74131	transcription start site region 74131	within coordinates
Tssr74132	transcription start site region 74132	146 bp downstream
Tssr74133	transcription start site region 74133	845 bp downstream
Tssr74134	transcription start site region 74134	1072 bp downstream
Tssr74135	transcription start site region 74135	1155 bp downstream
Tssr74136	transcription start site region 74136	1223 bp downstream
Tssr74137	transcription start site region 74137	1289 bp downstream
Tssr74138	transcription start site region 74138	1319 bp downstream
Tssr74139	transcription start site region 74139	1353 bp downstream
Tssr74140	transcription start site region 74140	1408 bp downstream
Tssr74141	transcription start site region 74141	1808 bp downstream
Tssr74142	transcription start site region 74142	1951 bp downstream