rs249471561 SNP Detail

Summary

• ID
  rs249471561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:7161459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCTTTCT GAGCATGGAG
  TCCCAGTTGG CATCTGGTTC TGAATTTATT CTGTCTGGGT GCAAAGTTCA GGGCCCCAGC
  TGGCCTCTCT TTTTTGATTT GGCCTCTCAG GAAATGCCAG GCTGAGGCAT CCTGCCCACG
  AGGAAGCTCT GGGCCTCTGG CCAAGAGCTA ATGCTTCGTT TGCTAGAAAC CGTCGGAGGT
  Y
  GCAGCTTCTC CCATCTCTCA GAGGAACTGG CGTGCAGGAT CCCAGAAGGC CCTCTTGCCC
  AAGGAGCCTG AGTTTCTCAT CTACCAAACG GCTCCCTGAG ACTCGGCTGC AAACCCTCAA
  TGACCTCTTG CCCCCGCAAG CAAAATTCCT CGGGTCTAGA CTAGCACCTG GCGGAGGAGA
  GCCATGATTC AATTTGTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382314103	MGP_WTSI_11_7111462	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249471561					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382314103	MGP_WTSI_11_7111462	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:7161459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2571	CpG island 2571	1585 bp proximal
Gm73927	predicted gene, 73927	1616 bp downstream
Igfbp3	insulin-like growth factor binding protein 3	Intron
Rr442458	regulatory region 442458	within coordinates
Rr442459	regulatory region 442459	920 bp distal
Rr442460	regulatory region 442460	1232 bp proximal
Tssr100303	transcription start site region 100303	1436 bp downstream
Tssr106774	transcription start site region 106774	1947 bp upstream
Tssr106775	transcription start site region 106775	1265 bp upstream
Tssr106776	transcription start site region 106776	1955 bp downstream
Tssr106777	transcription start site region 106777	1981 bp downstream