rs249472121 SNP Detail

Summary

• ID
  rs249472121
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69493747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGCTGC CCGGTGCTGT
  AACCATAGTG GGTAGGGTCC CCAATGCCAG AGCAATCGCC CAGTTGGGTC CGGTTGAACT
  GGCAGGCACG TTTTGGGTAG TTCAGAACCC CATTATCAGG TTGCTCATAA TATCGCCCTG
  GACGGCAGAC ATCATTCTTC TGTGCTTGGA TGGAGTCGTT GTAAGCTAGG AGGTGGGAGG
  S
  AGACAGAGAA GGTCAGAGGC CAAATGTCTC ACTTCCAGGG TCCTGGATTC CTTCCCCCAA
  GGTCCTGGAC TAGCCCCACA CTCACGTTCC AAGAACTTGT TGAGCTTCTG AACATGCTGA
  CCCCAGCTTT CAGTGTCACT AATGTTGACA ATGACATCAA GGTTCTCAGT CTTGGGTCGA
  ATCATCAAGC CTAGAGCCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787342	MGP_WTSI_11_69416423	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249472121					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787342	MGP_WTSI_11_69416423	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69493747 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	within coordinates
Cpgi3137	CpG island 3137	1770 bp proximal
Gm72066	predicted gene, 72066	within coordinates
Rr386229	regulatory region 386229	1465 bp downstream
Rr450036	regulatory region 450036	1434 bp proximal
Tssr102488	transcription start site region 102488	1718 bp downstream
Tssr102489	transcription start site region 102489	1672 bp downstream
Tssr108726	transcription start site region 108726	1956 bp upstream
Tssr108727	transcription start site region 108727	1935 bp upstream
Tssr108728	transcription start site region 108728	1891 bp upstream
Tssr108729	transcription start site region 108729	1806 bp upstream
Tssr108730	transcription start site region 108730	1774 bp upstream
Tssr108731	transcription start site region 108731	1732 bp upstream
Tssr108732	transcription start site region 108732	1671 bp upstream
Tssr108733	transcription start site region 108733	456 bp upstream
Tssr108734	transcription start site region 108734	138 bp upstream
Tssr108735	transcription start site region 108735	89 bp upstream
Tssr108736	transcription start site region 108736	61 bp upstream
Tssr108737	transcription start site region 108737	617 bp downstream