rs249476581 SNP Detail

Summary

• ID
  rs249476581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112425432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAACCG CTGTACCCGC
  CTTGCCTCGC CTTGGGCTCA TTCCATTTAC CATATCTTGT TTTAAAAACC GTATCTAAGG
  ATTTTTTTTT TTGTAACACT TTTTCTGAAG GTCTGATCCA CTAACCATAT AAATCTTCTT
  TTGGAAGTAA ACTTTAGGTG GTTGGTGGGT TTTAGGATGC TCACATTACG CACTGATCCT
  Y
  GTCTACTTTT AGAACATTTG TACATCCCCC AAAGCAGCAG TCCCTAACCC TCAACTCCCA
  AACCTCTTTC CCCAGACCCC GGCTCACCTT CATCTACACT ACTATCTGTC TATGGATTTC
  TCTGCTCTGG GTGGTTCTGT GTATGGTTCC TCATGTGCAT AGTATTTCCT AGTGTGGATA
  TTGTGTGTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366277727	MGP_WTSI_5_112706586	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249476581					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366277727	MGP_WTSI_5_112706586	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112425432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16258	CpG island 16258	271 bp distal
D5Mit94	DNA segment, Chr 5, Massachusetts Institute of Technology 94	115 bp proximal
D5Mit94.1	DNA segment, Chr 5, Massachusetts Institute of Technology 94.1	212 bp proximal
Rr124048	regulatory region 124048	within coordinates
Rr124049	regulatory region 124049	1368 bp proximal
Rr399260	regulatory region 399260	990 bp downstream
Tpst2	protein-tyrosine sulfotransferase 2	within coordinates
Tssr47986	transcription start site region 47986	873 bp downstream
Tssr47987	transcription start site region 47987	810 bp downstream
Tssr47988	transcription start site region 47988	796 bp downstream
Tssr47989	transcription start site region 47989	85 bp downstream
Tssr52564	transcription start site region 52564	1198 bp upstream
Tssr52565	transcription start site region 52565	1184 bp upstream