rs249477106 SNP Detail

Summary

• ID
  rs249477106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8730651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTAGAC ACACAGATGT
  AAGTTATCAT CGTGGAGCTT TTAGGCACTT GGTCCTTGGT GAAGAATCTG GTGGCTGGAG
  ACAGACACGG GCTTCAGTCT CTCACCCCGT TAGATTTTTT TTTCCTCTCT ATTTAGCCCC
  AACATGTCTC TTTCCTCCAA ATTCTTTTGG CAGTTCGTTT TCTAAATCTG TATATAAAAT
  Y
  CCGACTATCT AGTTGTTCTT TTTAATAAGC CATTTCCCAA TCCTTTCTTA AATAGCAACA
  GACAAACATG AGTGACTTGA CCTAAATCAG GGCTGTCACA ACCGGAGGAG CTCCGGGAGA
  CAGGCGCTTG CTGAAAGGTG CATTAGCTCA GTTGAAAGAG GATTGGGGTG ATGTATTCAC
  TGCTCAAGAA CCCATGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356905113	MGP_WTSI_3_8665591	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249477106					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356905113	MGP_WTSI_3_8665591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8730651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	470 bp distal
Cpgi12962	CpG island 12962	924 bp proximal
Gm64520	predicted gene, 64520	940 bp upstream
Hey1	hairy/enhancer-of-split related with YRPW motif 1	Intron
Rr573305	regulatory region 573305	882 bp distal
Rr573306	regulatory region 573306	450 bp proximal
Rr573307	regulatory region 573307	1553 bp proximal
Rr573308	regulatory region 573308	1655 bp proximal
Tssr32550	transcription start site region 32550	191 bp downstream
Tssr32551	transcription start site region 32551	1242 bp downstream
Tssr32552	transcription start site region 32552	1372 bp downstream
Tssr32553	transcription start site region 32553	1406 bp downstream
Tssr32554	transcription start site region 32554	1442 bp downstream
Tssr32555	transcription start site region 32555	1458 bp downstream
Tssr32556	transcription start site region 32556	1686 bp downstream