rs249477291 SNP Detail

Summary

• ID
  rs249477291
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74534838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCCAAC ACTGACGTCT
  ATCAAGGGTG AAATGATGGA AACTATATTC ATGGGCATGA TTTCCATTAA ATATCAATTA
  ACCTGGGAGC CTCAACCAGG CATGCAGTGC GTCAAGGGTA AATGTACATC TCATTTCCAC
  AGGGCCTGCT TGGCTGGAAA AAGCAGGACT TTGATTCGCT TTGATAAGGT CAGGATTCGG
  R
  GGCTGGATTG TGGCTTTTTA ATCAAAACCA CTTAGCTAGG CCCAAACAAA TGCAAGGACC
  AATCAATCCG TCAACCTCGC TCGTCCACAG TAAGAAATGC AAAAAGAAAA AGGAAAAAAA
  AAAAAGCCAC AGCCAGTCTC TGCTGGGCAG ATCCAGGAGC CTTGCTGGAG GAGAGACCGT
  CTGCTCCGAG GCCTCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485016	MGP_WTSI_2_74542551	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249477291					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485016	MGP_WTSI_2_74542551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74534838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	within coordinates
Gm38462	predicted gene, 38462	within coordinates
Gm75671	predicted gene, 75671	1056 bp downstream
Hoxd8	homeobox D8	135 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	1838 bp distal
Rr559361	regulatory region 559361	1447 bp distal
Rr559363	regulatory region 559363	245 bp distal
Rr559364	regulatory region 559364	within coordinates
Rr559365	regulatory region 559365	132 bp proximal
Rr559366	regulatory region 559366	236 bp proximal
Rr559367	regulatory region 559367	253 bp proximal
Rr559368	regulatory region 559368	1867 bp proximal
Tssr18420	transcription start site region 18420	38 bp upstream
Tssr18421	transcription start site region 18421	129 bp upstream
Tssr18422	transcription start site region 18422	331 bp upstream
Tssr18423	transcription start site region 18423	367 bp upstream
Tssr18424	transcription start site region 18424	423 bp upstream
Tssr18425	transcription start site region 18425	552 bp upstream
Tssr18426	transcription start site region 18426	592 bp upstream
Tssr18427	transcription start site region 18427	651 bp upstream
Tssr18428	transcription start site region 18428	684 bp upstream
Tssr18429	transcription start site region 18429	846 bp upstream
Tssr18430	transcription start site region 18430	1244 bp upstream
Tssr24623	transcription start site region 24623	1321 bp downstream