rs249478669 SNP Detail

Summary

• ID
  rs249478669
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4167076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAGGGACC CCACCTGGAG ACCCCTGGGA
  TCTCAGCATT GGCAATTCTT TTCCTAAAGC CACCGGGCTG CATCGGGTAC GTCGAAGTCC
  CTGGTCTGTT TGCTAACTAG TCTGTCTTCC TCCCACGCCC CCGGTTGAAG ACCCCTGCCC
  W
  CTACAACCTT CTCACCTCGT GGTCCAGACT TAATTGAGAT CCGACTTAAG CTGGGGTCCC
  TCCTGGCCTC TCTGGCGCCT TTTTCCTTCT TTCTGCAGGA GAGATCTCAC CTGGCAAATA
  AAGTAAGTGT CACGTCCTAC CTGGTAGGGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093638	CHEV_7_4115679	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249478669					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4167076 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	within coordinates
Gm73056	predicted gene, 73056	within coordinates
Rr641923	regulatory region 641923	215 bp distal
Rr641924	regulatory region 641924	within coordinates
Rr641925	regulatory region 641925	773 bp proximal
Tssr70452	transcription start site region 70452	170 bp downstream
Tssr70453	transcription start site region 70453	424 bp downstream
Tssr70454	transcription start site region 70454	584 bp downstream
Tssr70455	transcription start site region 70455	607 bp downstream
Tssr70456	transcription start site region 70456	643 bp downstream
Tssr70457	transcription start site region 70457	719 bp downstream
Tssr70458	transcription start site region 70458	949 bp downstream