rs249478981 SNP Detail

Summary

• ID
  rs249478981
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84504295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGC TAGCAAGCAT GAACCACGGG
  A
  TCCCCAGCTC CACACAAGAC AAAAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261407	CHEV_16_84707652	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249478981					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84504295 () rs orientation: forward

Symbol	Name	Function Class
Gm60965	predicted gene, 60965	within coordinates
Mir155hgit	Mir155 host gene intronic transcript	within coordinates
Rr329073	regulatory region 329073	1994 bp proximal
Rr404939	regulatory region 404939	1976 bp downstream
Rr404940	regulatory region 404940	1099 bp upstream
Tssr139159	transcription start site region 139159	1827 bp downstream
Tssr139160	transcription start site region 139160	1759 bp downstream
Tssr139161	transcription start site region 139161	1522 bp downstream
Tssr139162	transcription start site region 139162	1467 bp upstream
Tssr139163	transcription start site region 139163	1643 bp upstream
Tssr139164	transcription start site region 139164	1913 bp upstream
Tssr139165	transcription start site region 139165	1942 bp upstream
Tssr139166	transcription start site region 139166	1975 bp upstream