rs249484578 SNP Detail

Summary

• ID
  rs249484578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173421419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCCTCT GCTTCCCGAG
  TGCTCTGATT AAAGGCGTGT GTCATGACTG CCTGGTGTTT TTGCTCTTCT TTCTAGAAAA
  TTATGCTCTA TAAAGGATCC AAGATTCTAG CTGAGAATAA TTTTCCCTCC TTTTAGACCA
  ACAGACTTGA TAAGTTTCCA TTACCTGAGC AGTAGAAGCT TGTTTTGCTG CAGAGGCCCT
  R
  CAGCGTGCCT CGTGTTCTTA CTGTAGACAC GCAGCACACA CAAAGCGGGA CAGCTTCTGG
  CTTTGTTTTT AATCGTGTGT CTCTAACTTT AATGAATTAA CTCTGTGCTA CAGTAGCCCA
  GATGTTGCCT GTGCTGGGTA TTTGAGTTCT TTACATTTTT CCTAGTCTCT TTGGCACCGC
  ATAGACGCCT TCCTTTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356672150	MGP_WTSI_2_173405127	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249484578					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356672150	MGP_WTSI_2_173405127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173421419 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	1353 bp upstream
Cpgi12846	CpG island 12846	811 bp distal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	347 bp downstream
Ppp4r1l-ps	protein phosphatase 4, regulatory subunit 1-like, pseudogene	1573 bp downstream
Rr571985	regulatory region 571985	1677 bp distal
Rr571986	regulatory region 571986	795 bp distal
Tssr27995	transcription start site region 27995	1446 bp upstream
Tssr27996	transcription start site region 27996	1427 bp upstream
Tssr27997	transcription start site region 27997	1415 bp upstream
Tssr27998	transcription start site region 27998	1348 bp upstream
Tssr27999	transcription start site region 27999	1292 bp upstream