rs249485827 SNP Detail

Summary

• ID
  rs249485827
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3727578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGAACAG TCACCAGGAA
  ATTGACTTGG GAGCCACCAG GGAATTGCTC ATCCCTTTCT TTTCCCTACA CTGGGCAGTT
  CTAGACCTGA GGCTTTCTGA AGGTACCTCT GGGGAAGTGT GTGGATGGTA GGTGGGGAGG
  AATTCAGGCC CTAAGTCACC CACTCTGGTG AGAGGGAGGG AGAGAAAAGG TGTCTGGTGC
  M
  GACTTCCTGA GGTTAGCCTT AGTTCCTTGA GGCAGCGAAG GCTGCAGTCA CCCCTTCCCT
  GTGCAGCACA GGAAGCTCAG AGAGCTTGCC CCAGAGCTGT TCATTAGACT AGTTAACCGT
  GTTACCAGAG CGCTCCAGGA TCAGATGGAG AACAGCATCC ACTCGGATAC GGTTTGTTCT
  CTGATCCATG ATTCATACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205089	CHEV_2_3643813	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249485827					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3727578 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1111 bp upstream
Rr396754	regulatory region 396754	282 bp upstream
Rr550942	regulatory region 550942	within coordinates
Tssr15911	transcription start site region 15911	633 bp upstream
Tssr22380	transcription start site region 22380	179 bp downstream
Tssr22381	transcription start site region 22381	246 bp downstream