rs249489821 SNP Detail

Summary

• ID
  rs249489821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11509390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGGTGG GTCTTGGAGA
  GGGCATAAAG TGACAAGAAA GCATTGAGAG TTAACAGGAG ATCAGATCAG TCAGGGTTGG
  GGAGAGAAGG GAATTGAAAA AGAGAACTGA GAAAAATGCC ACTAAATTAC TTTGTAGGTG
  GGAATCATGA TATCTTAAAG ACCTTTGTAA GTTTGTCAGT AGGTTCTCAT GAAAGCCAGG
  Y
  TTTAGCTAAG AGATAAATAG AAAAAAATAT GGTCCTATAG TCAGGTACCA AATTGTACCA
  GTGTTGGCTG GTGTGTTCCA GCTTCCTCAT TCTGACTCTC AGCCACTCGG ATCCTTCAAC
  TGAGGTCACA TATCTTAAGA AAGCCTATAC ATTCCCAGGA TGTTATTGGT CGTTCCCCAC
  CTTGACTCTG AGCTGGTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382421373	MGP_WTSI_11_11459393	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249489821					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382421373	MGP_WTSI_11_11459393	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11509390 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	within coordinates
Gm29945	predicted gene, 29945	1462 bp upstream
Rr402417	regulatory region 402417	1905 bp downstream
Rr442717	regulatory region 442717	1962 bp distal
Rr442719	regulatory region 442719	1548 bp distal
Rr442720	regulatory region 442720	1435 bp distal
Rr442721	regulatory region 442721	980 bp distal
Rr442722	regulatory region 442722	487 bp distal
Rr442723	regulatory region 442723	1251 bp proximal
Tssr100349	transcription start site region 100349	1992 bp downstream
Tssr100350	transcription start site region 100350	1959 bp downstream
Tssr100351	transcription start site region 100351	1447 bp downstream
Tssr100352	transcription start site region 100352	1364 bp downstream